[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 34 items for (author: bravo & jpk)

EMDB-40249:
CRISPR-Cas type III-D effector complex bound to a target RNA
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40248:
CRISPR-Cas type III-D effector complex
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40250:
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40251:
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40276:
CRISPR-Cas type III-D effector complex consensus map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40296:
CRISPR-Cas type III-D effector complex local refinement map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40297:
CRISPR-Cas type III-D effector complex bound to a target RNA local refinement map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40298:
CRISPR-Cas type III-D effector complex bound to a target RNA consensus map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-41358:
Structure of activated SAVED-CHAT filament
Method: single particle / : Bravo JPK, Taylor DW

EMDB-27393:
D. vulgaris type I-C Cascade bound to dsDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27403:
type I-C Cascade bound to ssDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27412:
type I-C Cascade bound to AcrIF2
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27402:
type I-C Cascade
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27409:
type I-C Cascade bound to AcrIC4
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27178:
Structure of Cas12a2 binary complex
Method: single particle / : Bravo JPK, Taylor DW

EMDB-27179:
Cas12a2 quaternary complex
Method: single particle / : Bravo JPK, Taylor DW

EMDB-27180:
Structure of Cas12a2 ternary complex
Method: single particle / : Bravo JPK, Taylor DW

EMDB-26485:
Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922
Method: single particle / : Yelland JN, Bravo JPK, Black JJB, Taylor DW, Johnson AW

EMDB-24938:
DrmAB:ADP
Method: single particle / : Bravo JPK, Taylor DW, Brouns SJJ, Aparicio-Maldonado C

EMDB-24939:
Structure of DrmAB:ADP:DNA complex
Method: single particle / : Bravo JPK, Taylor DW, Brounds SJJ, Aparicio-Maldonado C

EMDB-24974:
Structure of type I-D Cascade bound to a dsDNA target
Method: single particle / : Schwartz EA, Taylor DW

EMDB-24976:
Structure of type I-D Cascade bound to a ssRNA target
Method: single particle / : Schwartz EA, Taylor DW

EMDB-24833:
Cryo-EM structure of Cas9 in complex with 12-14MM DNA substrate, 5 minute time-point
Method: single particle / : Bravo JPK, Taylor DW, Liu MS, Johnson KA

EMDB-24834:
Cas9 in complex with 12-14MM DNA at 60 minute time-point, linear conformation
Method: single particle / : Bravo JPK, Taylor DW, Liu MS, Johnson KA

EMDB-24835:
Cas9 bound to 12-14MM DNA, 60 min time-point, kinked conformation
Method: single particle / : Bravo JPK, Taylor DW, Liu MS, Johnson KA

EMDB-24836:
Cas9 in complex with 15-17MM DNA, 60 min time-point
Method: single particle / : Bravo JPK, Taylor DW, Liu MS, Johnson KA

EMDB-24837:
Cas9 in complex with 18-20MM DNA, 1 min time-point, linear conformation
Method: single particle / : Bravo JPK, Taylor DW, Liu MS, Johnson KA

EMDB-24838:
Cas9:gRNA in complex with 18-20MM DNA, 1 minute time-point, kinked active conformation
Method: single particle / : Bravo JPK, Taylor DW, Liu MS, Johnson KA

EMDB-13474:
CryoEM structure of Rotavirus NSP2
Method: single particle / : Bravo JPK, Borodavka A

EMDB-13475:
NSP2 RNP Complex focused 3D class with substrate density
Method: single particle / : Bravo JPK, Borodavka A

EMDB-13476:
NSP2 RNP complex
Method: single particle / : Bravo JPK, Borodavka A

EMDB-22340:
Type IV-B CRISPR Complex
Method: single particle / : Bravo JPK, Taylor DW

EMDB-23109:
SARS-CoV-2 RdRp in complex with 4 Remdesivir monophosphate
Method: single particle / : Bravo JPK, Taylor DW

EMDB-22876:
Cryo-EM Structure of the Desulfovibrio vulgaris Type I-C Apo Cascade
Method: single particle / : O'Brien R, Wrapp D, Bravo JPK, Schwartz E, Taylor D

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more